Index

A | B | C | D | E | F | G | L | M | N | O | P | Q | S | W

A

assembly() (in module NGS)

B

batch_iterator() (in module BLAST)
batchAlignment() (in module MUSCLE)
BLAST (module)

blastn() (in module BLAST)
blastParser() (in module BLAST)
bluntSplicer() (in module MUSCLE)

C

copies_per_gene() (in module OrthoDB)
copies_per_gene_table() (in module OrthoDB)

count_reads() (in module NGS)

D

designPrimers() (in module MUSCLE)

E

eraseFalsePosi() (in module BLAST)

F

filterByMinDist() (in module BLAST)

find_index_in_seq() (in module NGS)

G

get_cds() (in module BLAST)
get_velvet_params() (in module NGS)

getLargestExon() (in module BLAST)
guess_best_kmer() (in module NGS)

L

levenshtein() (in module NGS)

M

makeblastdb() (in module BLAST)

MUSCLE (module)

N

NGS (module)

O

OrthoDB (module)

P

parse_blast_results() (in module NGS)

prepare_data() (in module NGS)

Q

quality_control() (in module NGS)

S

single_copy_genes() (in module OrthoDB)
single_copy_in_species() (in module OrthoDB)
split_ionfile_by_results() (in module NGS)

split_results_file() (in module NGS)
storeExonsInFrame() (in module BLAST)

W

wellSeparatedExons() (in module BLAST)